Advancing anal cancer prevention: Screening expansion and the emerging role of host-cell DNA methylation
By Rebecca Millecamps, Fujirebio
Anal cancer incidence remains low in the general population but is significantly elevated in defined at-risk groups, including people living with HIV, men who have sex with men (MSM), immunocompromised individuals, and women with a history of HPV-associated disease. Persistent infection with high-risk human papillomavirus (hrHPV) is recognized as the principal causal factor in the development of anal intraepithelial neoplasia (AIN) and anal squamous cell carcinoma (ASCC).1
Recent years have marked an inflection point in the field, driven by three key developments:
- Evidence that treatment of high-grade squamous intraepithelial lesions (HSIL) reduces progression to anal cancer.1
- Identification of the anal cancer incidence by risk group and proposal of a unified anal cancer risk scale.2
- Publication of updated international screening recommendations supporting structured screening of at-risk populations.3
The objective of screening moves from early diagnosis of cancer towards prevention of cancer through diagnosis and treatment of precancerous lesions in groups at risk. Attention is increasingly turning toward risk stratification tools that may help refine management decisions beyond hrHPV detection and cytology alone.4,5
From detection to prevention: a changing clinical landscape
The ANCHOR trial demonstrated that treatment of anal HSIL significantly reduced the incidence of progression to invasive anal cancer.1 These findings have provided an important evidence base for expanded screening recommendations in high-risk populations.3
Previous Fujirebio “Insight” articles have reviewed both the evolving screening guidelines³ and the clinical validation of host-cell methylation testing in anal disease.6
Expanded screening, however, introduces complexity. Cytology and hrHPV testing identify cellular abnormalities and high risk HPV infection but do not directly measure the biological transformation processes associated with carcinogenic progression. Many lesions regress or remain stable, while only a subset progress. The ability to distinguish between these trajectories remains a key unmet clinical need.
Host-cell DNA methylation as a molecular marker of transformation
Epigenetic alterations, including hypermethylation of specific host-cell genes, are associated with transforming HPV infections and malignant progression.7
The PreCursorM AnoGYN (Research Use Only) assay targets methylation of the human genes ZNF582 and ASCL1, biomarkers that have been associated with advanced disease biology in HPV-related neoplasia.6,7 Elevated methylation levels reflect host-cell genomic alterations linked to transformation rather than viral presence alone.7
Evaluation studies previously summarized in the Fujirebio Insights series demonstrated an association between methylation positivity and high-grade anal and vulvar disease, suggesting that host-cell methylation may provide complementary biological information within screening and surveilance algorithms.6
Clinical validation of the ASCL1 and ZNF582 methylation-specific test, currently available as the Research Use Only (RUO) PreCursor-M AnoGYN assay, is ongoing in two nationwide prospective studies. New evidence supporting prognostic potential
Recently, Ferré et al. (2025) reported longitudinal data evaluating ZNF582 and ASCL1 methylation levels in patients with prior anal HSIL.8 In this study, higher methylation levels were associated with increased likelihood of progression toward anal cancer over follow-up.8
Methylation testing in this investigation was performed using the PreCursor-M AnoGYN (Research Use Only) assay.8
While continued validation in broader populations is warranted, these findings contribute to accumulating evidence that host-cell methylation markers may have prognostic value in identifying lesions with higher progression risk.7–9
Importantly, methylation testing assesses host epigenetic transformation – a biological process distinct from hrHPV detection – and therefore represents a potentially complementary molecular approach rather than a replacement for established screening methods.
Integration into screening pathways
As screening frameworks evolve, laboratories and clinicians face increasing volumes of individuals identified through hrHPV testing and cytology. Risk-based stratification approaches are being explored to support:
- Prioritization for high-resolution anoscopy (HRA)
- Surveillance versus treatment decisions
- More individualized patient management
Within this context, host-cell methylation testing is being evaluated as a potential triage tool to support clinical decision-making.7–9
Further prospective data and real-world implementation studies will be important to clarify optimal positioning within screening algorithms.
Implementation considerations: standardization and workflow
For molecular biomarkers to be incorporated into broader screening strategies, practical laboratory considerations are critical, including workflow efficiency, reproducibility, and standardization.
Fujirebio is developing an automated platform intended to support methylation testing workflows. Automation may facilitate standardized processing and reduce manual handling steps in routine laboratory environments.
As screening volumes expand in accordance with updated guidelines, such developments may help support scalable implementation, subject to regulatory approval and validation in intended-use settings.
A field in transition
Anal cancer prevention is moving toward a more structured and evidence-based framework, supported by:
- Demonstrated benefit of HSIL treatment¹
- Updated screening recommendations3,4,5
- Increasing evaluation of molecular markers reflecting carcinogenic progression7–9
Host-cell DNA methylation markers such as ZNF582 and ASCL1 are being studied as biologically meaningful indicators of progression risk.7–9 As evidence continues to accumulate, these markers may contribute to more refined risk stratification within screening programs.
Ongoing research, guideline development, and technological advances are shaping a future in which prevention strategies increasingly incorporate molecular insights alongside cytology and hrHPV testing.
References
- Palefsky JM, et al. Treatment of anal high-grade squamous intraepithelial lesions to prevent anal cancer. N Engl J Med. 2022;386:2273–2282.
- Clifford GM et al. A meta-analysis of anal cancer incidence by risk group: Toward a unified anal cancer risk scale. Int J Cancer. 2021 Jan 1;148(1):38-47.
- Stier EA, et al. International Anal Neoplasia Society's consensus guidelines for anal cancer screening. Int J Cancer. 2024 May 15;154(10):1694-1702.
- Spindler L, et al.; Société Nationale Française de Colo-Proctologie. Screening for precancerous anal lesions linked to human papillomaviruses: French recommendations for clinical practice. Tech Coloproctol. 2024 Jan 10;28(1):23.
- German-Austrian Guideline on Anal Dysplasia and Anal Cancer Screening in People living with HIV. Registernummer: 055-007, Entwicklungsstufe: S2k.AWMF Leitlinienregister
- Fujirebio Insight. Updated anal cancer screening guidelines now provide a basis for expansion of screening to all at-risk populations. Fujirebio.
- Fujirebio Insight. Clinical validation of the PreCursor-M AnoGYN test: Tailoring treatment of anal and vulvar cancer precursors. Fujirebio.
- van der Zee RP, et al. DNA methylation markers have universal prognostic value for anal cancer risk. Mol Oncol. 2021;15:2771–2785.
- Ferré VM, et al. Higher levels of host-cell DNA methylation markers ZNF582 and ASCL1 on anal smears are predictive for progression to anal cancer in patients with previous high-grade lesions. eBioMedicine. 2025;120:105936.
- Dias Gonçalves Lima F, et al. DNA methylation analysis on anal swabs for anal cancer screening in people living with HIV. J Infect Dis. 2024.